PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5474_iso_1
Common Nameorca1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ERF
Protein Properties Length: 376aa    MW: 41079.8 Da    PI: 4.747
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5474_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.72.9e-1879129155
                                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                          ++y+GVr++  +g+WvAeIr+p   + r  r +lg+f  a eAa a+++a+++++g
  cra_locus_5474_iso_1_len_1799_ver_3  79 CKYRGVRQRT-WGKWVAEIREP---N-RgSRLWLGTFRNAIEAALAYDEAARAMYG 129
                                          79*****999.**********8...3.35************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.1E-1279129IPR001471AP2/ERF domain
CDDcd000183.75E-2979138No hitNo description
SMARTSM003801.3E-3380143IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-3080138IPR001471AP2/ERF domain
PROSITE profilePS5103220.5680137IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-2080137IPR016177DNA-binding domain
PRINTSPR003671.1E-88192IPR001471AP2/ERF domain
PRINTSPR003671.1E-8103119IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MALLDQASNL SPMPFDFTRK RKSRRRDGTK NVAETLAKWK EYNEKLDALD GGKPARKVPA  60
KGSKKGCMKG KGGPENSHCK YRGVRQRTWG KWVAEIREPN RGSRLWLGTF RNAIEAALAY  120
DEAARAMYGP CARLNLPNYR ASEESSSLPT TSGSDTTTAS GISEVSVYED KKFTPVVSGL  180
KQDDKGESLE SADSKPQLLV DAGTPMSAVK EEPKEYQVMD SQSEGQFGDE EPPSKLVCKE  240
VDFGQDQAVV PAVKNAEEMG GEMGGDILKG CSLSEMFDVD ELLSVLDSTP LHASDFQHGM  300
GNGNVKAEAA YNYAPSWDSA FQLQNQDPKL GSQQHMAQTP PEINSGLDFL QPGRQEDSYF  360
TLGDLDFLDL GAELGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-1681137360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11722TRKRKS
21826RKRKSRRRD
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009594350.15e-99PREDICTED: dehydration-responsive element-binding protein 2A-like
TrEMBLQ9LEM70.0Q9LEM7_CATRO; AP2-domain DNA-binding protein
STRINGPGSC0003DMT4000615412e-96(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37012445
Publications ? help Back to Top
  1. Menke FL,Champion A,Kijne JW,Memelink J
    A novel jasmonate- and elicitor-responsive element in the periwinkle secondary metabolite biosynthetic gene Str interacts with a jasmonate- and elicitor-inducible AP2-domain transcription factor, ORCA2.
    EMBO J., 1999. 18(16): p. 4455-63
    [PMID:10449411]